1999-00 AUS Men's Basketball Standings
| Baldwin Division | |||||||||
| GP | W | L | Home | Road | PF | PA | +/- | Pts | |
| xy-StFX | 20 | 16 | 4 | 9-1 | 7-3 | 1690 | 1476 | 214 | 32 |
| x-Saint Mary's | 20 | 15 | 5 | 9-1 | 6-4 | 1504 | 1352 | 152 | 30 |
| x-Memorial | 20 | 8 | 12 | 4-4 | 4-8 | 1575 | 1634 | -59 | 16 |
| Dalhousie | 20 | 5 | 15 | 3-7 | 2-8 | 1424 | 1642 | -218 | 10 |
| Nelson Division | |||||||||
| GP | W | L | Home | Road | PF | PA | +/- | Pts | |
| xy-UNB | 20 | 13 | 7 | 11-0 | 2-7 | 1506 | 1466 | 40 | 26 |
| x-Acadia | 20 | 12 | 8 | 8-3 | 4-5 | 1475 | 1364 | 111 | 24 |
| x-Cape Breton | 20 | 9 | 11 | 5-4 | 4-7 | 1543 | 1562 | -19 | 18 |
| UPEI | 20 | 2 | 18 | 1-10 | 1-8 | 1387 | 1608 | -221 | 4 |
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